![]() Installation of package ‘hdf5r’ had non-zero exit statusģ: In install.packages("Seurat", dependencies = TRUE) :Ĥ: In install.packages("Seurat", dependencies = TRUE) : Today I've tried a fresh R install and using install('Seurat', dependencies = TRUE), I still got similar errors:ġ: In install.packages("Seurat", dependencies = TRUE) :Ģ: In install.packages("Seurat", dependencies = TRUE) : Then, I've tried install.packages('sn') and got:ĮRROR: dependency ‘mnormt’ is not available for package ‘sn’ Installation of package ‘metap’ had non-zero exit status ![]() Installation of package ‘TFisher’ had non-zero exit status Installation of package ‘sn’ had non-zero exit status I followed the instructions, but I got problems with install.packages('metap'): This can be accomplished with the following commands: - install.packages('BiocManager') BiocManager::install('multtest') install.packages('metap'). Its output is the message:Įrror: Please install the metap package to use FindConservedMarkers. However, the function FindConservedMarkers stopped working now (in the same tutorial, I didn't modify anything). Installation of package ‘C:/Users/user/AppData/Local/Temp/Rtmpy68RcO/file395c49a6204b/fle圎L_0.0.0.1.tar.gz’ had non-zero exit status.I was following the guided tutorial Stimulated vs Control PBMCs using RStudio. Make: *** Error 1ĮRROR: compilation failed for package 'fle圎L'ĮRROR: Failed to install 'fle圎L' from GitHub: inst/include/fle圎L/inner_elc.h:478:25: note: mismatched types 'const Eigen::ArrayBase' and 'Eigen::DenseCoeffsBase, 1>::Scalar ' In file included from F:/r/R-3.6.2/library/RcppEigen/include/Eigen/Core:533:0,įrom F:/r/R-3.6.2/library/RcppEigen/include/Eigen/Dense:1,įrom F:/r/R-3.6.2/library/RcppEigen/include/RcppEigenForward.h:30,įrom F:/r/R-3.6.2/library/RcppEigen/include/RcppEigen.h:25,į:/r/R-3.6.2/library/RcppEigen/include/Eigen/src/Core/GlobalFunctions.h:88:36: note: template const Eigen::CwiseUnaryOp Eigen::isinf(const Eigen::ArrayBase&)ĮIGEN_ARRAY_DECLARE_GLOBAL_UNARY(isinf,scalar_isinf_op,infinite value test,\sa Eigen::isnan DOXCOMMA Eigen::isfinite DOXCOMMA ArrayBase::isinf)į:/r/R-3.6.2/library/RcppEigen/include/Eigen/src/Core/GlobalFunctions.h:32:4: note: in definition of macro 'EIGEN_ARRAY_DECLARE_GLOBAL_UNARY'į:/r/R-3.6.2/library/RcppEigen/include/Eigen/src/Core/GlobalFunctions.h:88:36: note: template argument deduction/substitution failed: inst/include/fle圎L/inner_elc.h:478:25: note: candidate is: If (isinf(rho_(kk)) & weights_save(kk) = 0) rho_(kk) = 0 inst/include/fle圎L/inner_elc.h:478:25: error: no matching function for call to 'isinf(Eigen::DenseCoeffsBase, 1>::Scalar&)' ![]() inst/include/fle圎L/inner_elc.h: In member function 'void fle圎L::InnerELC::LambdaNR(int&, double&)': In file included from inner_elc_exports.cpp:9:0: Inner_el_exports.cpp:77:8: warning: variable 'not_conv' set but not used Ĭ:/RBuildTools/3.5/mingw_32/bin/g++ -std=gnu++11 -I"F:/r/R-3.6.2/include" -DNDEBUG -I"F:/r/R-3.6.2/library/Rcpp/include" -I"F:/r/R-3.6.2/library/RcppEigen/include" -I"./inst/include/fle圎L" -O2 -Wall -mtune=generic -c inner_elc_exports.cpp -o inner_elc_exports.o Inner_el_exports.cpp: In function 'Eigen::VectorXd OmegaHat(Eigen::MatrixXd, int, double, bool, bool)': checking for LF line-endings in source and make files and shell scripts (590ms).√ checking for file 'C:\Users\user\AppData\Local\Temp\Rtmpy68RcO\remotes395c75252046\mlysy-fle圎L-db2feb0/DESCRIPTION' ![]() Kipping 3 packages not available: RcppEigen, Rcpp, numDeriv
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